1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTCGATTCTGTTCATTACTCCTTTAGCAGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAGgttctgcgtaaactgttaacaactagggtgaatgaacagtttttttcctgacaaatccatattgaatagtgtaagcattataattatctgaaaatactagaggaatctcatagcttgattctatgtattagaacatacttttggatgcagttgagacgggcatgacatggtcagtgcag
species | Physcomitrella patens |
transcript | PP1S55_123V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAG GGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCCEST: gi|100353232|gb|BY945672.1|BY945672
genomic: AGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAGgttctgcgta ... gtcagtgcagGGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCC
EST: AGCCCTTCCAACCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAG GGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCCEST: gi|100412798|gb|BY992441.1|BY992441
genomic: AGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAGgttctgcgta ... gtcagtgcagGGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCC
EST: AGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAG GGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCC
genomic: AGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAGgttctgcgta ... gtcagtgcagGGCTTGCAATCTTCTGCTGTGTACCCACGACTCTCTCGAGCGGTGTATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCGATTCTGTTCATTACTCCTTTAGCAGCCCTTCCAATCTTGCGCCTTCAGCTAAATCCTAAAGAACTTGCTACAGgttctgcgtaaactgttaacaactagggtgaatgaacagtttttttcctgacaaatccatattgaatagtgtaagcattataattatctgaaaatactagaggaatctcatagcttgattctatgtattagaacatacttttggatgcagttgagacgggcatgacatggtcagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC