1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCCATTCAGGCGGCTTCACTTATTGTGATAGGTCCCTTTGTTGACTATATTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATTgtaagccagtaactcaactgaaaactagagcagctagtggttgatgtgtcgtgagaaggggatatcctttctatgatttgatgatatcgtagcgtgctgc...
species | Physcomitrella patens |
transcript | PP1S54_317V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATT TTCTTTATACTTCTTTCCTGCACACTTGCGGTGTTCTGTAACATAAGCCAAEST: gi|18340380|gb|BJ172408.1|BJ172408
genomic: TTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATTgtaagccagt ... ttctgtgcagTTCTTTATACTTCTTTCCTGCACACTTGCGGTGTTCTGTAACATAAGCCAA
EST: TTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATT TTCTTTATACTTCTTTCCTGCACACTTGCGGTGTTCTGTAACATAAGCCAAEST: gi|18338619|gb|BJ170643.1|BJ170643
genomic: TTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATTgtaagccagt ... ttctgtgcagTTCTTTATACTTCTTTCCTGCACACTTGCGGTGTTCTGTAACATAAGCCAA
EST: TTACTGAACTACACGTACACCGCAGGAGCCATT TTCTTTATACTTCTTTCCTGCACACNTGCGGTGTTCTGTAACATAAGCCAA
genomic: TTACTGAACTACACGTACACCGCAGGAGCCATTgtaagccagt ... ttctgtgcagTTCTTTATACTTCTTTCCTGCACACTTGCGGTGTTCTGTAACATAAGCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCATTCAGGCGGCTTCACTTATTGTGATAGGTCCCTTTGTTGACTATATTCTGATTGGAGAGGTTTTACTGAACTACACGTACACCGCAGGAGCCATTgtaagccagtaactcaactgaaaactagagcagctagtggttgatgtgtcgtgagaaggggatatcctttctatgatttgatgatatcgtagcgtgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG