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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGACAAGACAGCCACTATTCAGGATAATACCTTTCGCTTCAAGAAGCAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttgtatcagttcatgagttgcaccacatttgatggagtgtgtttctatcagctaattgtgtttcttagcacacgtgtagaaaccggtctgaag...

Basic information

species Physcomitrella patens
transcript PP1S52_233V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S52_233V6.4 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ06041 (Selaginella moellendorffii), 5'ss of exon 3
TGGTGGACAAGACAGCCACTATTCAGGATAATACCTTTCGCTTCAAGAAGCAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttgtat-cagttcatgagttgcaccacatt-tgatggagtgtgtttctatcagctaattgtgtttctta-gcacacgtgtagaaaccgg-tctgaag
|||||||||||||| |||| || || |||||||  || |||||||| || || || ||||| || |  || || |||||||| |||||||||||||| |||| |||| |      || ||  |   |    |  ||  | || |  | | ||| |   ||||    |  | | | |  |  ||||         |  | || ||
TGGTGGACAAGACATCCACGATGCAAGATAATAGTTTCCGCTTCAAAAAACAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttatacccatagctctcgctctcggtccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcag

upper sequence: PP1S52_233V6.4 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ30194 (Selaginella moellendorffii), 5'ss of exon 3
TGGTGGACAAGACAGCCACTATTCAGGATAATACCTTTCGCTTCAAGAAGCAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttgtat-cagttcatgagttgcaccacatt-tgatggagtgtgtttctatcagctaattgtgtttctta-gcacacgtgtagaaaccgg-tctgaag
|||||||||||||| |||| || || |||||||  || |||||||| || || || ||||| || |  || || |||||||| |||||||||||||| |||| |||| |      || ||  |   |  | |  ||  | || |  | | ||| |   ||||    |  | | | |  |  ||||         |  | || ||
TGGTGGACAAGACATCCACGATGCAAGATAATAGTTTCCGCTTCAAAAAACAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttatacccatagctctcgctctcgatccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836310|gb|BJ594318.1|BJ594318
EST:     AGTCACGTCGACTGCGACAAGCCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: AGTCACGTCGACTGCGACAAG-CCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|162205012|gb|FC381721.1|FC381721
EST:     GCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: GCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|162193407|gb|FC370973.1|FC370973
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|37831140|gb|BJ589152.1|BJ589152
EST:     GTGGATAAAAAACGCCAANCTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATNGTACATCATCATTTCGTT
genomic: GTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|208347434|gb|DC917225.1|DC917225
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|162219104|gb|FC394687.1|FC394687
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|18333344|gb|BJ165358.1|BJ165358
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|37825390|gb|BJ583456.1|BJ583456
EST:     AGTCACGTCGACTGCGACAAGCCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: AGTCACGTCGACTGCGACAAG-CCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|162219105|gb|FC394688.1|FC394688
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
EST: gi|18338519|gb|BJ170543.1|BJ170543
EST:     CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTT                         GGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT
genomic: CAGTCACGTCGACTGCGACAAGCCATGTGGATAAAAAACGCCAAACTTTTgtaagttttg ... gctttcgcagGGCAACTCTGACTTGTCTCATAATTGTCTTATTGTACATCATCATTTCGTT