1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTACAAAGCTACTGTGGAAGCAGTTACTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggttttatctgaggttttttcaatgcgcggtggtaatgttgtgattgcttctctaatttttatttgcactctttttttcttttctttttttgatgatgatttagtgtctgaaatatgttatttaccctgtag
species | Physcomitrella patens |
transcript | PP1S51_234V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAG GTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAAEST: gi|208362835|gb|DC950635.1|DC950635
genomic: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggtt ... taccctgtagGTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAA
EST: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAG GTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAAEST: gi|162217337|gb|FC392805.1|FC392805
genomic: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggtt ... taccctgtagGTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAA
EST: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAG GTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAAEST: gi|37839714|gb|BJ597722.1|BJ597722
genomic: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggtt ... taccctgtagGTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAA
EST: CTCCAGGGGGCTACTTTGTCGTNTACGATGAGTGGGGCAACAAAGAAGAG GTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAA
genomic: CTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggtt ... taccctgtagGTAGATGCTTCGAATATAAGGGAGCTCAACATCCCAGATGACGATGCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAAGCTACTGTGGAAGCAGTTACTCCAGGGGGCTACTTTGTCGTCTACGATGAGTGGGGCAACAAAGAAGAGgtatgtggttttatctgaggttttttcaatgcgcggtggtaatgttgtgattgcttctctaatttttatttgcactctttttttcttttctttttttgatgatgatttagtgtctgaaatatgttatttaccctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG