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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGCAGCTAATGGCGTAAAGAGGGTCTGGGTGGGGCAGAACACTCTTCTTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggaggggctgaactgccatttggacatggctaacttgataaaaaaacgattaaagtcgataagatgttctcagattttcatcatcctatccttt...

Basic information

species Physcomitrella patens
transcript PP1S4_12V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100414742|gb|BY956841.1|BY956841
EST:     TTTTCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAAGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCC
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCC
EST: gi|162178865|gb|FC354797.1|FC354797
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|67718841|gb|BJ969100.1|BJ969100
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGT
EST: gi|162159187|gb|FC334358.1|FC334358
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|67571702|gb|BJ944526.1|BJ944526
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|100375450|gb|BY948872.1|BY948872
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAGTAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|67568839|gb|BJ941663.1|BJ941663
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|18354475|gb|BJ186531.1|BJ186531
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|18348776|gb|BJ180825.1|BJ180825
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|208351568|gb|DC909998.1|DC909998
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|162257953|gb|FC433839.1|FC433839
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|162185024|gb|FC362470.1|FC362470
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|67717090|gb|BJ967349.1|BJ967349
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|100437911|gb|BY961558.1|BY961558
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|18363906|gb|BJ195978.1|BJ195978
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|18368891|gb|BJ200976.1|BJ200976
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCCGG
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCC-GG
EST: gi|67570443|gb|BJ943267.1|BJ943267
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|18347743|gb|BJ179790.1|BJ179790
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
EST: gi|162276463|gb|FC452466.1|FC452466
EST:     TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCAT                         GGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT
genomic: TTTCCACCCCTGCCGTGTCTGCAATCATCCGAGAGCGAGTGAATAGTCATgtaagtggag ... tggttttcagGGTGAAAAGGCGTACGGTGCATTCATTCTGACCGCCAGCCACAACCCCGGT