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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAATGGAGATGCCATGAAGAAGGCACTGGAACAAGTGCTTTATGAGGCTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgcttgcattggaattttttctttcatgtgtcacgtccattgtcaatgtcggatggcacatgcataggtgtctttgttgactttagagcacgc...

Basic information

species Physcomitrella patens
transcript PP1S49_289V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37825684|gb|BJ583750.1|BJ583750
EST:     CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACG                         ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
genomic: CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgc ... tggaaaccagACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
EST: gi|162156191|gb|FC332566.1|FC332566
EST:     CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACA                         ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
genomic: CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgc ... tggaaaccagACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
EST: gi|162237926|gb|FC412527.1|FC412527
EST:     CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACA                         ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
genomic: CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgc ... tggaaaccagACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
EST: gi|37833531|gb|BJ591543.1|BJ591543
EST:     CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACG                         ACACGGGTCTACGCGAACAACGTGGATCCCCTGCGGGATTATGCACATTAC
genomic: CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgc ... tggaaaccagACACGGGTCTACGCGAACAACGTGGAT-CCCTGCGGGATTATGCACATTAC
EST: gi|162158208|gb|FC335251.1|FC335251
EST:     CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACA                         ACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC
genomic: CTCATGTGGACATCCTTGTTGCGGGTCATGTTCATGCCTACGAGCGCACGgtaagcatgc ... tggaaaccagACACGGGTCTACGCGAACAACGTGGATCCCTGCGGGATTATGCACATTACC