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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAACTCCGAAGGCTGTACTGAGATTGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAGgtttgagatctgctctatgtcagttttagatccttctccctgttatgtgattgtactcttgcaacttcatatttcactcatctcaggcgtctacacagca...

Basic information

species Physcomitrella patens
transcript PP1S490_9V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100372742|gb|BY948681.1|BY948681
EST:     TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAG                         AAATATCGACTTGCAAAGTATATGCCAGAGNATCTCG-AAG
genomic: TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAGgtttgagatc ... tgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAG-ATCTCGGAAG
EST: gi|208355697|gb|DC910519.1|DC910519
EST:     TGATGGGTGTTCAAGGCATANCTATCTACCACGTGAAAAGCCATCTCNAG                         AAATATCGACTTGCAA-GTATATGCCA-AGATCTCGGAA
genomic: TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAGgtttgagatc ... tgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAGATCTCGGAA