1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGTCTTCGATATCATGGGATGGCACCACTAGTATCACATGTTTATGAACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgactactttatcgctgcatatatacctgctgttcaaactcgcaaccttcctacaagccctgctttttcttgagcaggttgcatccaagtcatga...
species | Physcomitrella patens |
transcript | PP1S48_37V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|162217427|gb|FC392895.1|FC392895
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|162253370|gb|FC429796.1|FC429796
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|37826678|gb|BJ584690.1|BJ584690
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|162253371|gb|FC429797.1|FC429797
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|162217426|gb|FC392894.1|FC392894
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCAEST: gi|37848442|gb|BJ606450.1|BJ606450
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
EST: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAG CTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
genomic: ACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgact ... gcttgctcagCTGCATTAAAATTTGCTCGCACTGAGGGGATTATTCCTGCACCTGAGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTCTTCGATATCATGGGATGGCACCACTAGTATCACATGTTTATGAACTTGGTCTTATGGAGGCTATTGCAATCCCTCAAGTTGAGTGTTTTGAAGgtaagtgactactttatcgctgcatatatacctgctgttcaaactcgcaaccttcctacaagccctgctttttcttgagcaggttgcatccaagtcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG