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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTGAAGACGCTGAACAGGAATCTCGGGGGACTGCACATCATCCTCGTGGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccgattcgacaccccaacggacattaatcgcacggtttgaatcccctcccatagctccaagcttaaaatgattcctgacacgtattggtgggttctgacaagcag

Basic information

species Physcomitrella patens
transcript PP1S485_2V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208347940|gb|DC921197.1|DC921197
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|162222426|gb|FC398005.1|FC398005
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGACGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|7047034|gb|AW476928.1|AW476928
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|37846234|gb|BJ604242.1|BJ604242
EST:     TGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: TGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|162159249|gb|FC335102.1|FC335102
EST:     AGGTTCTGTTTCATCACGGATCTGAACATGCAG                       
genomic: AGGTTCTGTTTCATCACGGATCTGAACAT---Ggtattgaccg ... tgacaagc
EST: gi|37822701|gb|BJ580767.1|BJ580767
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|37831570|gb|BJ589582.1|BJ589582
EST:     TTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: TTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208400527|gb|DC925277.1|DC925277
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208385996|gb|DC956512.1|DC956512
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|37845798|gb|BJ603806.1|BJ603806
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|37833033|gb|BJ591045.1|BJ591045
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208394827|gb|DC924102.1|DC924102
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|162259231|gb|FC436161.1|FC436161
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|162270838|gb|FC446867.1|FC446867
EST:     AGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: AGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208383478|gb|DC923630.1|DC923630
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208398656|gb|DC920551.1|DC920551
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|208381316|gb|DC919206.1|DC919206
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
EST: gi|162208831|gb|FC384967.1|FC384967
EST:     GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATG                         GTTTTGAGAACACGACGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG
genomic: GGACCAGACCAAGGCCTTCGAGGTTCTGTTTCATCACGGATCTGAACATGgtattgaccg ... tgacaagcagGTTTTGAGAACACGATGACACCGTGTTGCATTGGGAAAGCGGTTCCTCACG