1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAACGGGTGCATTTTTCGTCTCCATCTTCTTGCCAGTGCAAACGCTGGTGGTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgccatccgtcgcttctatatttgagccgacttttgttgcatatattagtaactatcacaagtctcacttgatgtcccaacttaacttggctgaccctgtttcatttcctctattgagcgtttttggacaatatggtgcag
species | Physcomitrella patens |
transcript | PP1S46_43V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37831545|gb|BJ589557.1|BJ589557
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|162185616|gb|FC362029.1|FC362029
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37837339|gb|BJ595347.1|BJ595347
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37831150|gb|BJ589162.1|BJ589162
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|208380165|gb|DC927444.1|DC927444
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|208362740|gb|DC950540.1|DC950540
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|18338090|gb|BJ170114.1|BJ170114
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37821201|gb|BJ579267.1|BJ579267
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCAGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37833806|gb|BJ591818.1|BJ591818
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37823393|gb|BJ581459.1|BJ581459
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGGEST: gi|37835190|gb|BJ593202.1|BJ593202
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
EST: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGT CGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
genomic: GTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgcc ... tatggtgcagCGTGATAGGGGGTGTGCTGGTTATTGGAGGATTCTACATCGTCAATTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACGGGTGCATTTTTCGTCTCCATCTTCTTGCCAGTGCAAACGCTGGTGGTGGCTGTTCTGGCAATTATTGTGCTCGGCGAGACTCTCTACCTAGGAGTgtaagttgccatccgtcgcttctatatttgagccgacttttgttgcatatattagtaactatcacaagtctcacttgatgtcccaacttaacttggctgaccctgtttcatttcctctattgagcgtttttggacaatatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT