Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAGgtactgatttttccaccaccacttgatcgtatctttgtcttagcaactcaacttgctttccattgtacatgactgaattttttcttgtcgcgtggtattcacattcctcttgtttgtttagtaattcatcatgagaagatataggatttttcttatttgtttcgaatctgtag

Basic information

species Physcomitrella patens
transcript PP1S46_317V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167971|gb|FC344909.1|FC344909
EST:     CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAG                         GTATGGGACATGGGAAATCATATTCGATCAATGGCAACTAGTGGACCTGAT
genomic: CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAGgtactgattt ... gaatctgtagGTATGGGACATGGGAAATCATATTCGATCAATGGCAACTAGTGGACCTGAT
EST: gi|100446205|gb|CJ970504.1|CJ970504
EST:     CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAG                         GTATGGGACATGGGAAATCATATTCGATCANTGGCAACTAGTGGACCTGAT
genomic: CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAGgtactgattt ... gaatctgtagGTATGGGACATGGGAAATCATATTCGATCAATGGCAACTAGTGGACCTGAT
EST: gi|208384348|gb|DC928099.1|DC928099
EST:     CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAG                         GTATGGGACATGGGAAATCATATTCGATCAATGGCAACTAGTGGACCTGAT
genomic: CTCAACAATCTCATATCGTTGCCACGTGGGGTGATTCAGGGTATGTTCAGgtactgattt ... gaatctgtagGTATGGGACATGGGAAATCATATTCGATCAATGGCAACTAGTGGACCTGAT