Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGCTTTGCAAAGTGAGGGCTGCTCAGTTCGGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttcattattgcgagagcgtatacgatattttgcaaattgttttcgtcgttttaacattaaatattatcgtcttgtgttagtactgtgtttaccgttgacttgcattgtgtagtcagttatgctaatataacacatgtattctatggcag

Basic information

species Physcomitrella patens
transcript PP1S461_1V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18373420|gb|BJ204998.1|BJ204998
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCT
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCT
EST: gi|162259879|gb|FC436014.1|FC436014
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|37835287|gb|BJ593299.1|BJ593299
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|22492080|gb|BU052003.1|BU052003
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAAGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67569698|gb|BJ942522.1|BJ942522
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|18340542|gb|BJ172570.1|BJ172570
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|19784127|gb|BQ040125.1|BQ040125
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162228343|gb|FC405215.1|FC405215
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|37843912|gb|BJ601920.1|BJ601920
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67692707|gb|BJ952940.1|BJ952940
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|208350851|gb|DC925940.1|DC925940
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162259878|gb|FC436013.1|FC436013
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162271079|gb|FC446613.1|FC446613
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|208397549|gb|DC912167.1|DC912167
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|7584270|gb|AW700166.1|AW700166
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67696750|gb|BJ956983.1|BJ956983
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162228344|gb|FC405216.1|FC405216
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162204462|gb|FC381690.1|FC381690
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162231579|gb|FC408211.1|FC408211
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|37832657|gb|BJ590669.1|BJ590669
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|19783246|gb|BQ039983.1|BQ039983
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162234371|gb|FC410117.1|FC410117
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162231565|gb|FC408210.1|FC408210
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67692963|gb|BJ953196.1|BJ953196
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|18331744|gb|BJ163755.1|BJ163755
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAA
EST: gi|37830901|gb|BJ588913.1|BJ588913
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67700004|gb|BJ960237.1|BJ960237
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67573367|gb|BJ946191.1|BJ946191
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162204461|gb|FC381689.1|FC381689
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|67569443|gb|BJ942267.1|BJ942267
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|18355712|gb|BJ187771.1|BJ187771
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|37837338|gb|BJ595346.1|BJ595346
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162271080|gb|FC446614.1|FC446614
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162211721|gb|FC388009.1|FC388009
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
EST: gi|162211720|gb|FC388008.1|FC388008
EST:     GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAG                         GTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA
genomic: GGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 10

TACAAGCTTTGCAAAGTGAGGGCTGCTCAGTTCGGAGACAAGGGTGTTCCCCATGTCACCACCTTCGATGGTCGCACCATCAGgtattgtttc ... tctatggcagGTACCCAGACCCTCTCATCAAGGCTAACGACACAGTGAAGATCAACCTTGAGACAGGAAAGGTTGTTGAGTTCATTAAGTTCGACATTGGTAATATTGTG




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