1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGTCGGTACCGGCAGGGGAGCTGCTCACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactgataatgtacactcaaccataatatgcattgccttcgtacactacgtttttcagcgtgtttagcttgagaaagttgggaaatgaccttcgc...
species | Physcomitrella patens |
transcript | PP1S41_288V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|162208338|gb|FC384650.1|FC384650
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCEST: gi|22492406|gb|BU052329.1|BU052329
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTC
EST: AAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|37848453|gb|BJ606461.1|BJ606461
genomic: AAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|162208337|gb|FC384649.1|FC384649
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|208385711|gb|DC952872.1|DC952872
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATCNGACTCGTTGEST: gi|100447071|gb|CJ971370.1|CJ971370
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|162153092|gb|FC329498.1|FC329498
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: AAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|208391882|gb|DC945961.1|DC945961
genomic: AAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|7648237|gb|AW739220.1|AW739220
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: CGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|37824863|gb|BJ582929.1|BJ582929
genomic: CGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCNTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|162261874|gb|FC438398.1|FC438398
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTGEST: gi|37844356|gb|BJ602364.1|BJ602364
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
EST: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAG GCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
genomic: ACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactg ... tgatgttcagGCAAATCACTTCCAAGCGCAGCCTCAGAGGCCCAAGACATTGGACTCGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGGTACCGGCAGGGGAGCTGCTCACTCTCGAAGACGCACTGTAGGAGCCGCACCATCAGTCTCGTTTCGACAGgtctcaactgataatgtacactcaaccataatatgcattgccttcgtacactacgtttttcagcgtgtttagcttgagaaagttgggaaatgaccttcgc
- - - - - - - - - - - - - - - CGAAGA