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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATATGAAGCAGCTTCTCACAGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctcagatagcttcttagttgaaacatgtgctctgctggtttataataaattgtcattctttgttgacattgagttgggatccactactgtaccctgagacatgtgaatcgtctgagataacttgtccag

Basic information

species Physcomitrella patens
transcript PP1S3_535V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S3_535V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ31297 (Selaginella moellendorffii), 5'ss of exon 5
TGTTATATGAAGCAGCTTCTCACAGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctcagatagcttcttagttgaaacatgtgctctgctggtttataataaattgtcattctttgttgacattgagttgggatccactactgtaccctgagacatgtgaatcgtctgagataacttgtccag
||||||||||||||||||||||| || ||  | ||||| ||| | |||||||| |||||  ||||||||||||||     ||    |   ||||| ||        ||||   ||||   | |  |  |||  |                                                                           
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgt----ccttgagtttattctt-gtca------gtgcctggctgaagttttgtggatttgcgcag-----------------------------------------------------------------------

upper sequence: PP1S3_535V6.2 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ34303 (Selaginella moellendorffii), 5'ss of exon 4
TGTTATATGAAGCAGCTTCTCACAGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctcagatagcttcttagttgaaacatgtgctctgctggtttataataaattgtcattctttgttgacattgagttgggatccactactgtaccctgagacatgtgaatcgtctgagataacttgtccag
||||||||||||||||||||||| || ||  | ||||| ||| | |||||||| |||||  ||||||||||||||    |||    |   ||||| ||        ||||   ||||   | |  |  |||  |                                                                           
TGTTATATGAAGCAGCTTCTCACCGGCCTTTACTACTGTCATATCAACCAAGTTCTTCATCGGGATATCAAAGgt----tcttgagtttattctt-gtca------gtgcctggctgaagttttgtggatttgcgcag-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186337|gb|FC361645.1|FC361645
EST:     AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAG                         GTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
genomic: AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctc ... acttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
EST: gi|162156181|gb|FC332556.1|FC332556
EST:     AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAG                         GTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG
genomic: AGGTCTACATTACTGCCATGTGAACCAAGTGCTTCACAGGGATATCAAAGgtactgtctc ... acttgtccagGTTCAAATCTTCTTATCGACAACAATGGCATTTTGAAGCTTGCCGACTTCG