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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACTAGGTTTTGGGCGCTTCTTAAGTTGCTTGGGCAAAAACTGGCACCCAAATTGCTTTTGTTGCAAAAAATGCAATAATGCAATAGCAGAACGCGAGgtatttgcttttagactttcttgtggtactctagtgccctttacatcatccatcagattcaaacattgtcaaagctgctgccatttgatagcgattaagt...

Basic information

species Physcomitrella patens
transcript PP1S395_19V6.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100387138|gb|BY951537.1|BY951537
EST:     CAAATTGCTTTTGTTGCAAAAAATGCAATAATGCAATAGCAGAACGCGAG                         TTCTCAGTTCAGGGAAATGAAGCTTATCATCGGGAATGTTACAAGGAAATT
genomic: CAAATTGCTTTTGTTGCAAAAAATGCAATAATGCAATAGCAGAACGCGAGgtatttgctt ... tttaactcagTTCTCAGTTCAGGGAAATGAAGCTTATCATCGGGAATGTTACAAGGAAATT
EST: gi|162191987|gb|FC367200.1|FC367200
EST:     CAAATTGCTTTTGTTGCAAAAAATGCAATAATGCAATAGCAGAACGCGAG                         TTCTCAGTTCAGGGAAATGAAGCTTATCATCGGGAATGTTACAAGGAAATT
genomic: CAAATTGCTTTTGTTGCAAAAAATGCAATAATGCAATAGCAGAACGCGAGgtatttgctt ... tttaactcagTTCTCAGTTCAGGGAAATGAAGCTTATCATCGGGAATGTTACAAGGAAATT