1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCTCCTCCTCTCAGAGGGCCTGCATCTACTTTTAATCCGAGTGATATGGTTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatactagagtattctgctccttttgatctaaaaaatatcggtcctcttttttaaaattcgactggagttcattccaacatttaaagtgacatttg...
species | Physcomitrella patens |
transcript | PP1S391_72V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGTEST: gi|67725038|gb|BJ975297.1|BJ975297
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
EST: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGTEST: gi|162249932|gb|FC427657.1|FC427657
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
EST: TTAGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGTEST: gi|162227005|gb|FC402543.1|FC402543
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
EST: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGTEST: gi|162152368|gb|FC328555.1|FC328555
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
EST: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGTEST: gi|67695812|gb|BJ956045.1|BJ956045
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
EST: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAG GTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
genomic: TTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatact ... ttgtttccagGTCGTAATCTGCAATAATTGTGGAGGTCGAGGACATTTGGCCGTGGAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCCTCCTCTCAGAGGGCCTGCATCTACTTTTAATCCGAGTGATATGGTTTGTCATAATTGTCACCAACGTGGCCACAAAAGCAAAGAATGCTTGCAGgtatgatactagagtattctgctccttttgatctaaaaaatatcggtcctcttttttaaaattcgactggagttcattccaacatttaaagtgacatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaaa