Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGCTGTGCAAAGTCAGGTCTGCCCAATTTGGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggctttgggtgtttgtgcacttacaatatgatatttttattttctggatactttggcattgtacacaagaaaattggtttctcttctcttttgctatgttctgttatgttcatgtgatatgtattttttcag

Basic information

species Physcomitrella patens
transcript PP1S38_194V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162163788|gb|FC339828.1|FC339828
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162203304|gb|FC379583.1|FC379583
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18341630|gb|BJ173665.1|BJ173665
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162275355|gb|FC451539.1|FC451539
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37829954|gb|BJ587966.1|BJ587966
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162203305|gb|FC379584.1|FC379584
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18338593|gb|BJ170617.1|BJ170617
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37828754|gb|BJ586766.1|BJ586766
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162180494|gb|FC356136.1|FC356136
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162272442|gb|FC449068.1|FC449068
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162233566|gb|FC410948.1|FC410948
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67725986|gb|BJ976245.1|BJ976245
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162201159|gb|FC377666.1|FC377666
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162267482|gb|FC444233.1|FC444233
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162203574|gb|FC379060.1|FC379060
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162249702|gb|FC426816.1|FC426816
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162208795|gb|FC384931.1|FC384931
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67577870|gb|BJ950037.1|BJ950037
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162219345|gb|FC395341.1|FC395341
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162272443|gb|FC449069.1|FC449069
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|208397902|gb|DC916657.1|DC916657
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37848584|gb|BJ606592.1|BJ606592
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACGCTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162258650|gb|FC434345.1|FC434345
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67578018|gb|BJ950185.1|BJ950185
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18358480|gb|BJ190539.1|BJ190539
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162265552|gb|FC441567.1|FC441567
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162266614|gb|FC441987.1|FC441987
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18361783|gb|BJ193850.1|BJ193850
EST:     GAGACAAGGGTGTCCCACACATCACTACCTTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACGCTGTCAAGATCAACCTCGA
genomic: GAGACAAGGGTGTCCCACACATCACTACCTT-CGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162207153|gb|FC382475.1|FC382475
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67700739|gb|BJ960972.1|BJ960972
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162180495|gb|FC356137.1|FC356137
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|100436063|gb|BY979361.1|BY979361
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162276836|gb|FC452518.1|FC452518
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162277226|gb|FC453656.1|FC453656
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|7207455|gb|AW561456.1|AW561456
EST:     GAAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67569136|gb|BJ941960.1|BJ941960
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162277227|gb|FC453657.1|FC453657
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67725217|gb|BJ975476.1|BJ975476
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162267481|gb|FC444232.1|FC444232
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162258810|gb|FC434817.1|FC434817
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37829797|gb|BJ587809.1|BJ587809
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67571902|gb|BJ944726.1|BJ944726
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18344088|gb|BJ176127.1|BJ176127
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAA
EST: gi|37845158|gb|BJ603166.1|BJ603166
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACGCTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162272521|gb|FC448511.1|FC448511
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18337126|gb|BJ169150.1|BJ169150
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162258809|gb|FC434816.1|FC434816
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37824738|gb|BJ582804.1|BJ582804
EST:     GGAGACAAGGGTGTCCCACACATCANTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162163787|gb|FC339827.1|FC339827
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTTGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18327151|gb|BJ159152.1|BJ159152
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGT
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGT
EST: gi|162201547|gb|FC377429.1|FC377429
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18372500|gb|BJ204102.1|BJ204102
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18335428|gb|BJ167447.1|BJ167447
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162261991|gb|FC436824.1|FC436824
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37823281|gb|BJ581347.1|BJ581347
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162276835|gb|FC452517.1|FC452517
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|208377280|gb|DC902761.1|DC902761
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|19787796|gb|BQ040673.1|BQ040673
EST:     NGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCACCCTCGA
genomic: -GAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37821619|gb|BJ579685.1|BJ579685
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162235887|gb|FC411630.1|FC411630
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67695269|gb|BJ955502.1|BJ955502
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162264651|gb|FC441649.1|FC441649
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162207152|gb|FC382474.1|FC382474
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162201548|gb|FC377430.1|FC377430
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATNCA-GGCCAATGACACTGTCAAGATCAACCTCG
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTAT-CAAGGCCAATGACACTGTCAAGATCAACCTCG
EST: gi|162261992|gb|FC436825.1|FC436825
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18342475|gb|BJ174510.1|BJ174510
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACC
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACC
EST: gi|37851975|gb|BJ609983.1|BJ609983
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18350628|gb|BJ182679.1|BJ182679
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCT
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCT
EST: gi|162274060|gb|FC450132.1|FC450132
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162219346|gb|FC395342.1|FC395342
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18339974|gb|BJ172002.1|BJ172002
EST:     GCCGCACCATCAG                         ATACCCANATCCCCTNATCAAGGGCCAATGACACTGTCAAGATCAACCTCG
genomic: GCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAA-GGCCAATGACACTGTCAAGATCAACCTCG
EST: gi|37841563|gb|BJ599571.1|BJ599571
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162217323|gb|FC392063.1|FC392063
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67716696|gb|BJ966956.1|BJ966956
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|18364145|gb|BJ196218.1|BJ196218
EST:     GAGACAAGGGTGTCCCACACATCACTACCTTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATC
genomic: GAGACAAGGGTGTCCCACACATCACTACCTT-CGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATC
EST: gi|18332276|gb|BJ164289.1|BJ164289
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCG
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCG
EST: gi|162201160|gb|FC377667.1|FC377667
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|19786886|gb|BQ040554.1|BQ040554
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162264650|gb|FC441648.1|FC441648
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162208796|gb|FC384932.1|FC384932
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162203573|gb|FC379059.1|FC379059
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37852795|gb|BJ610803.1|BJ610803
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162233565|gb|FC410947.1|FC410947
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162203095|gb|FC380167.1|FC380167
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67698416|gb|BJ958649.1|BJ958649
EST:     GGAGACAAGGGTGTCCCACACATCANTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162235886|gb|FC411629.1|FC411629
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|37837929|gb|BJ595937.1|BJ595937
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|7148112|gb|AW510034.1|AW510034
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162266613|gb|FC441986.1|FC441986
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|162272508|gb|FC448510.1|FC448510
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
EST: gi|67701075|gb|BJ961308.1|BJ961308
EST:     GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAG                         ATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA
genomic: GGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 119

TACAAGCTGTGCAAAGTCAGGTCTGCCCAATTTGGAGACAAGGGTGTCCCACACATCACTACCTTCGATGGCCGCACCATCAGgtatttggct ... attttttcagATACCCAGATCCCCTTATCAAGGCCAATGACACTGTCAAGATCAACCTCGAGACGGGTAAGGTCGTAGAGTTCATCAAGTTTGATATCGGGAACATCGTT




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