1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACTGGGAACCAGTTTATGAGGACTCTATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctacattcagttgctgtctcttggtcatgcttggaattttactcagcatctgccatgaagtactagtccttcaattgataaatgcacaaactacaaatgcttgttgtttttgaaactatgtggtaagctctatctttatgcatcgttggggctgttttctgtag
species | Physcomitrella patens |
transcript | PP1S37_33V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCGTACATATATCNGA- GGTGTATAAAGGT-GAGATGTGA-TGCAGCAGA-TCAAGTTTGGATTACGCEST: gi|208363044|gb|DC957985.1|DC957985
genomic: TGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGCEST: gi|162233299|gb|FC409849.1|FC409849
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTGGGAACCAGTTTATGAGGACTCTATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctacattcagttgctgtctcttggtcatgcttggaattttactcagcatctgccatgaagtactagtccttcaattgataaatgcacaaactacaaatgcttgttgtttttgaaactatgtggtaagctctatctttatgcatcgttggggctgttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC