1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTATCTTATGCACAGCTATTCCGTGATGCACTGGTCGCCTATTACCAAGAAAGGAACTGAAGTGCTCAATGTCGCAGGCCCTGTTATTCCATCTTTGGAGgtgaacattttaaccaactcacagatccgttgttactatatcgtattctgttcagttagtctgtgatgtattttaaatacaactttaccaaattttctgt...
species | Physcomitrella patens |
transcript | PP1S376_49V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGA-CTGAAGTGCTCAATGTCGCAGGCCCTGTTATTC-ATCTTTGGAG GCTCAGAGCAGGCCTTTTCAACATGGGGTGGGEST: gi|162249446|gb|FC424051.1|FC424051
genomic: AAGGAACTGAAGTGCTCAATGTCGCAGGCCCTGTTATTCCATCTTTGGAGgtgaacattt ... atttgagcagGCTCAGAGCAGGCCTTTTCAACATGGGTTGGG
EST: AAGGAACTGAAGTGCTCAATGTCGCAGGCCCTGTTATTCCATCTTTGGAG GCTCAGAGCAGGCCTTTTCAACATGGGTTGGGACGTGTTCAGATTAGCACT
genomic: AAGGAACTGAAGTGCTCAATGTCGCAGGCCCTGTTATTCCATCTTTGGAGgtgaacattt ... atttgagcagGCTCAGAGCAGGCCTTTTCAACATGGGTTGGGACGTGTTCAGATTAGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTTATGCACAGCTATTCCGTGATGCACTGGTCGCCTATTACCAAGAAAGGAACTGAAGTGCTCAATGTCGCAGGCCCTGTTATTCCATCTTTGGAGgtgaacattttaaccaactcacagatccgttgttactatatcgtattctgttcagttagtctgtgatgtattttaaatacaactttaccaaattttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatacaa