1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTGCACAGCAAAGATGAATTTAAGTGAAGAAGTTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatctcatgcgatgtttcacagacaagatccaattctttacaagctctagaggcgtgcttcctttgaatttgtttttttgaagagtgtgttgtgt...
species | Physcomitrella patens |
transcript | PP1S36_183V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|67696448|gb|BJ956681.1|BJ956681
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|67727787|gb|BJ978046.1|BJ978046
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|162199281|gb|FC375117.1|FC375117
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|162199282|gb|FC375118.1|FC375118
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|162265817|gb|FC442404.1|FC442404
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGCEST: gi|15728529|gb|BI740834.1|BI740834
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
EST: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAG ATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
genomic: TTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatct ... acgtgtgcagATCTCCGCAATTTGTCAAGAGGCTGGCATGCATGCCGTACGAAAAAATCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGCACAGCAAAGATGAATTTAAGTGAAGAAGTTGACCTGGAAGACTACGTCTCTAGACCCGATAAGATAAGTGCAGCTGAGgtgagaatctcatgcgatgtttcacagacaagatccaattctttacaagctctagaggcgtgcttcctttgaatttgtttttttgaagagtgtgttgtgt
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA