1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTAGAGGAGCGCATCGAGGCAGCGGATCGCCGGAGAGTGGATGGAAACGAGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttctatttttatctagtatcccgactaactcatctggtggaagaggcagggttttatgatttccaattgtacttgtgggcacttgaggatagaa...
species | Physcomitrella patens |
transcript | PP1S364_48V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATG GCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTACEST: gi|162203750|gb|FC378625.1|FC378625
genomic: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttct ... tggttggtagGCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTAC
EST: TTATTNCAGGGAAGGGAAAATTGCCGAAGCCATGCAGNCA-TATGAAATG GCACTCGCTTACATGGGTGATGACTTCATEST: gi|162219329|gb|FC395325.1|FC395325
genomic: TTATT-CAAGGAAGGGAAAATTGCCGAAGCCATGCAG-CAATATGAAATGgtgcgcttct ... tggttggtagGCACTCGCTTACATGGGTGATGACTTCAT
EST: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATG GCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTNTGGCAAGTACEST: gi|208377355|gb|DC927043.1|DC927043
genomic: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttct ... tggttggtagGCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTAC
EST: GAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATG GCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTACEST: gi|208346599|gb|DC916865.1|DC916865
genomic: GAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttct ... tggttggtagGCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTAC
EST: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATG GCACTCGCTTACATGGGTGGTGACTTCATGTTTCAACTCTTTGGCAAGTAC
genomic: AGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttct ... tggttggtagGCACTCGCTTACATGGGTGATGACTTCATGTTTCAACTCTTTGGCAAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAGAGGAGCGCATCGAGGCAGCGGATCGCCGGAGAGTGGATGGAAACGAGTTATTCAAGGAAGGGAAAATTGCCGAAGCCATGCAGCAATATGAAATGgtgcgcttctatttttatctagtatcccgactaactcatctggtggaagaggcagggttttatgatttccaattgtacttgtgggcacttgaggatagaa
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