1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGTTACTCTTATAGCGACCCCGTGACGGAATTTTTGGAATGCTTGTATGTAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcggagaactcgtcattttggtctctagtgcaaactgtatctacatttttttcgaatgaggttattgtactggtttttcttagtatgtcaatt...
species | Physcomitrella patens |
transcript | PP1S363_21V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTEST: gi|162194164|gb|FC369481.1|FC369481
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTEST: gi|67723980|gb|BJ974239.1|BJ974239
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTEST: gi|162194165|gb|FC369482.1|FC369482
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTTEST: gi|37845565|gb|BJ603573.1|BJ603573
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
EST: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAG CTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
genomic: TAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcg ... tcctgcgcagCTGATTGTGAGCGACTTTTTCTTGGGCAAGCAAACATCGGAGAACGGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTACTCTTATAGCGACCCCGTGACGGAATTTTTGGAATGCTTGTATGTAAATTATGATTTCGAAGGAGCACAGCGAAAGCTTCGTGAATGTGAAGAGgtacgactcggagaactcgtcattttggtctctagtgcaaactgtatctacatttttttcgaatgaggttattgtactggtttttcttagtatgtcaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA