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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTTGGTGGCAGCCATGGTGTTGGTCGCGTATATTACAAAGGTCGAAAAGGTGACTACTACGTCATGgtgagtcacctattgaattgttatagtccaagcagacctttagttttcatgtagtcgtcttcttttcaaacttgtctcatgatttatttatttatttatgtatgtatttacttattttaatccgatttcgacttcgttcacatgctgtag

Basic information

species Physcomitrella patens
transcript PP1S360_49V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S360_49V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 4
CACTCTTGGTGGCAGCCATGGTGTTGGTCGCGTATATTACAAAGGTCGAAAAGGTGACTACTACGTCATGgtgagtcacctattgaattgttatagtccaagcagacctttagt--tttcatgtagtcgtcttcttttcaaactt-gtctcatgatttattta-tttatttatgtatgtatttacttattttaatccgatttcgacttcgttcacatgctgtag
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TGCACTTGGTGGCAGCCATGGTGTGCCACGGGTACATTACAAGGGCCGACAAGGTGACTACTATGTCATGgtatgt-gccaagtattttat-gtgttttttatgattttataacagtgtgatctagc--ttttctttatggatttagaatgacgatggagaaaacctttcaatgcatacag-------------------------------------------