1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGATTGATTTAGAGAAGGCCTGCAATTTTGTTGCCAATTGTAAAAACTTCGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcctgaacttagttctgagttagttttggacgtaggtttcagatcatgatcgtgaggccaggtttacttttcctgatcatgcttctaatatcaatattttacgctgtggtttcagtatctaaatatgtcgaatttgttctcatcaattgagttgggttgttgcag
species | Physcomitrella patens |
transcript | PP1S34_430V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAA TTTTTTGTTGCGEST: gi|100418156|gb|BY993361.1|BY993361
genomic: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCG
EST: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAA TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTGEST: gi|100422700|gb|BY957957.1|BY957957
genomic: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTG
EST: GACGGTGGTTTTGGTTGTGTTCCCTGGAGGG-A-TCCCACGCTGGTCAAA TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTGEST: gi|100440809|gb|BY980629.1|BY980629
genomic: GACGGTGGTTTTGGTTGTGTTCC-TGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTG
EST: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCC-ACGCTGGTCAAA TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTEST: gi|208377833|gb|DC940945.1|DC940945
genomic: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGT
EST: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAA TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTGEST: gi|100424688|gb|BY976765.1|BY976765
genomic: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTG
EST: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGA-TCCCACGCTGGTCAAA TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTGEST: gi|100440735|gb|BY980555.1|BY980555
genomic: CGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTTG
EST: GACGGTGGTTTTGGTTGTGTTCCTAGAGGG-AATCCCACGCTGGGTCAA- TTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTT
genomic: GACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGG-TCAAAgtgcgagcct ... gttgttgcagTTTTTTGTTGCGTAGGAGCACTTGCAATAGGCGGTGCTCTCCATCATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATTGATTTAGAGAAGGCCTGCAATTTTGTTGCCAATTGTAAAAACTTCGACGGTGGTTTTGGTTGTGTTCCTGGAGGGGAATCCCACGCTGGTCAAAgtgcgagcctgaacttagttctgagttagttttggacgtaggtttcagatcatgatcgtgaggccaggtttacttttcctgatcatgcttctaatatcaatattttacgctgtggtttcagtatctaaatatgtcgaatttgttctcatcaattgagttgggttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG