1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCAAACCTTTGCTGGGGAGGATAAGAGCACACTGAGTGAGGCGAAAGAGGAAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcgattattttgactacaaattttccgtgcttgtactgcttgtagaagcatatatcctgcctttttcatttcccatcccttaagttgtttcagtgaagtcatgtgctcactaaggttgttgtcgcag
species | Physcomitrella patens |
transcript | PP1S34_11V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTTEST: gi|208363942|gb|DC950346.1|DC950346
genomic: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCG-TTACCTTEST: gi|67724536|gb|BJ974795.1|BJ974795
genomic: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTTEST: gi|37827013|gb|BJ585025.1|BJ585025
genomic: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCCAG AAACATCGGTCTGNAGATCAGAGCGTTTACCTTEST: gi|37821083|gb|BJ579149.1|BJ579149
genomic: AGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTT-CCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: TCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTTEST: gi|67726125|gb|BJ976384.1|BJ976384
genomic: TCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AAGCTGTTAGAGCCATCATCGNATTTGTGAAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTTEST: gi|19783008|gb|BQ039949.1|BQ039949
genomic: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTTEST: gi|37836309|gb|BJ594317.1|BJ594317
genomic: AAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
EST: AAGTCTCCAGATATGTTCCAG AAACATCGGTCTGGAGATCAGAGCGTTTACCTT
genomic: AAGTCTCCAGATATGTTCCAGgttcaaatcg ... gttgtcgcagAAACATCGGTCTGGAGATCAGAGCGTTTACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAACCTTTGCTGGGGAGGATAAGAGCACACTGAGTGAGGCGAAAGAGGAAGCTGTTAGAGCCATCATCGAATTTGTGAAGTCTCCAGATATGTTCCAGgttcaaatcgattattttgactacaaattttccgtgcttgtactgcttgtagaagcatatatcctgcctttttcatttcccatcccttaagttgtttcagtgaagtcatgtgctcactaaggttgttgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT