1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACGCGTAAGAAGGTGCTCATTCTTGGAGGTGGACCTAACAGGATTGGTCAGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagtttgaatgtccaaattttatgtgatacgctgcacccgttacttaaaatataagcacgagtaaattcgtattttgattaatagaactatgcataatagatccgcactgagttcaatcatgctgatagtgatggaactcgggagctgtgcag
species | Physcomitrella patens |
transcript | PP1S343_21V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGG GATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCTEST: gi|100414657|gb|BY956800.1|BY956800
genomic: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagt ... agctgtgcagGATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCT
EST: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGG GATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCTEST: gi|162190215|gb|FC366373.1|FC366373
genomic: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagt ... agctgtgcagGATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCT
EST: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGG GATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCTEST: gi|162166055|gb|FC340451.1|FC340451
genomic: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagt ... agctgtgcagGATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCT
EST: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGG GATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCT
genomic: AGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagt ... agctgtgcagGATGCCGGATACGAAACTATTATGATGAACTCGAACCCAGAGACCGTATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGCGTAAGAAGGTGCTCATTCTTGGAGGTGGACCTAACAGGATTGGTCAGGGAATTGAGTTCGATTACTGTTGCTGCCACGCAGCTTTCTCCCTTGGGgtacgcgagtttgaatgtccaaattttatgtgatacgctgcacccgttacttaaaatataagcacgagtaaattcgtattttgattaatagaactatgcataatagatccgcactgagttcaatcatgctgatagtgatggaactcgggagctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT