1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttcagtttctttctttgcaattctacacataaccaacccattgcattggaagtactctttcatcttaatagcatcttcctacttaacgtcctag...
species | Physcomitrella patens |
transcript | PP1S340_38V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAG TGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCAEST: gi|67691703|gb|BJ951936.1|BJ951936
genomic: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttca ... ggttttgcagTGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCA
EST: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAG TGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCAEST: gi|67695048|gb|BJ955281.1|BJ955281
genomic: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttca ... ggttttgcagTGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCA
EST: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAG TGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCAEST: gi|162217820|gb|FC394120.1|FC394120
genomic: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttca ... ggttttgcagTGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCA
EST: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAG TGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCA
genomic: CACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttca ... ggttttgcagTGTATAGTGAAGAAACTCTGTGCGTTGGATTGGCTCGGTTGGGTACTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTAGGAAAGAGTATGAGCCTCCTAGATACATGAGCATCAACACCGCCATTGAGCAATTGCTTGAAGTAGAGGAGACGCGTGCGGGCAAAGgtccgtttcagtttctttctttgcaattctacacataaccaacccattgcattggaagtactctttcatcttaatagcatcttcctacttaacgtcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG