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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGTAAGTATCGACAACTTGATCGAAGATTATCTGACTTCAGAACCTAACAACGAGTACATCCAGTCCTGCGACATTGTCGCATTCAACAAAATCTgtaagtaacaagacattgttgatttatcactactacattgcaagatattttcagatttgagttttaatcctcatgtaactcctttgtttgattcttactgtaatttaattgaattgtgcag

Basic information

species Physcomitrella patens
transcript PP1S333_26V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S333_26V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os07g42300.2 (Oryza sativa), 5'ss of exon 7
GACTTGGTAAGTATCGACAACTTGATCGAAGATTATCTGACTTCAGAACCTAACAACGAGTACATCCAGTCCTGCGACATTGTCGCATTCAACAAAATCTgtaagtaacaagacattgttgatttatcactactacattgcaagatattttcagatttgagttttaatcctcatgtaactcctttgtttgat-tcttactgtaatttaattgaattgtgcag
||  | ||     | || |   |||| || || ||  |     | |||||    || ||||||||||||  |||||||||||| || |||||||| |||||||||| |    | |    | |     |     |  |||        ||      ||   ||| | || || | | ||     |     | | ||||| | |||                  
GATCTTGTGTCGGTTGATAGTCTGATTGAGGACTACTTCTACACCGAACCAGCGAATGAGTACATCCAGAGCTGCGACATTGTTGCGTTCAACAAGATCTgtaagttattccataagtatcagagcccgtcgttttatttgctagcgtt-----gttcttgttattatactgaagcaatcggatgaccagctgtcttattttaag-----------------

upper sequence: PP1S333_26V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G153569_T02 (Zea mays), 5'ss of exon 7
GACTTGGTAAGTATCGACAACTTGATCGAAGATTATCTGACTTCAGAACCTAACAACGAGTACATCCAGTCCTGCGACATTGTCGCATTCAACAAAATCTgtaagtaacaagacattgttgatttatcactactacattgcaagatattttcagatttgagttttaatcctcatgtaactcctttgtttgattcttactgtaatttaattgaattgtgcag------------------------------------------------------------
||| | ||   | | ||||   | ||||| ||  ||||     | || ||    | ||| ||| |||||  ||||||||||||||| |||||||| |||||||||| |     |||   | | |  | ||  || ||  | |  |||  |       ||     || || | || |   ||  |  |   |  | ||||   |||  | ||  |||| |||                                                            
GACCTTGTCTCTGTTGACACTCTCATCGAGGACCATCTCTGCGCTGAGCCAGTGAGCGAATACGTCCAGAGCTGCGACATTGTCGCCTTCAACAAGATCTgtaagtcatt---catcacttaatccttacagctgca--gtagcataactaggaccatgcaacctactcattatattggtctgtcatgcaa--cctactc--attatactgggttgtccagttgtaaacttttctgctctcaatgtgttgataacttttggtcaatcctgttgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696102|gb|BJ956335.1|BJ956335
EST:     TAACAACGAGTACATCCAGTCCTGCGACATTGTCGCATTCAACAAAATCT                         AGGATCTCGTACTCGCGGTTTGTGTGCGAACTGGCTTCAGGGATGCTCAGC
genomic: TAACAACGAGTACATCCAGTCCTGCGACATTGTCGCATTCAACAAAATCTgtaagtaaca ... aattgtgcagAGGATCTCGTACTCGCGGTTTGTGTGCGAACTGGCTTCAGGGATGCTCAGC