1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGTGAACCTTCTGGGCAAGTGGAAGGAGTCAGAGTACTCGCAGAGTGGTCAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAGgtaattctgatcaattggatgctcttgtaacatctttcactggttaattgcacgagtctttgttttacaacaaaatgacaacttgcaaatatcggcccag...
species | Physcomitrella patens |
transcript | PP1S323_56V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAG CCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTTEST: gi|37847016|gb|BJ605024.1|BJ605024
genomic: CAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAGgtaattctga ... ttcttgccagCCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTT
EST: CCCAGTNGGAGGCNTAGTTTACTACATTACTCCCCCGACGAG CCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTTEST: gi|208370161|gb|DC951760.1|DC951760
genomic: CCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAGgtaattctga ... ttcttgccagCCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTT
EST: CAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAG CCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTTEST: gi|37821435|gb|BJ579501.1|BJ579501
genomic: CAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAGgtaattctga ... ttcttgccagCCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTT
EST: ACTACATTACTCCCCCGACGAG CNTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTT
genomic: ACTACATTACTCCCCCGACGAGgtaattctga ... ttcttgccagCCTTGGTGATATTATTACCAATCCTTTCCACGCTATCTTCTACTTGACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAACCTTCTGGGCAAGTGGAAGGAGTCAGAGTACTCGCAGAGTGGTCAGCTCATCCCAGTTGGAGGCCTAGTTTACTACATTACTCCCCCGACGAGgtaattctgatcaattggatgctcttgtaacatctttcactggttaattgcacgagtctttgttttacaacaaaatgacaacttgcaaatatcggcccag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaaa