1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATCTCAGTAGACCTGAACACAATGGCCAGTGCTTTCAAGACTAGTGTAACAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattccagagcattttactgtcaaagtcacttgtttcgctgtgtagtgatttctttctacactcgcatttttagagaaggcgttggatctctgcatt...
species | Physcomitrella patens |
transcript | PP1S31_338V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37845778|gb|BJ603786.1|BJ603786
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|67726052|gb|BJ976311.1|BJ976311
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37851742|gb|BJ609750.1|BJ609750
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|162223424|gb|FC400315.1|FC400315
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|162200332|gb|FC376643.1|FC376643
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|162223425|gb|FC400316.1|FC400316
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37836464|gb|BJ594472.1|BJ594472
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|208382267|gb|DC919255.1|DC919255
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37847958|gb|BJ605966.1|BJ605966
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37842497|gb|BJ600505.1|BJ600505
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|162200333|gb|FC376644.1|FC376644
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|37846187|gb|BJ604195.1|BJ604195
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAAEST: gi|67728119|gb|BJ978378.1|BJ978378
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
EST: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAG GCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
genomic: CAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattcca ... tatgttgcagGCTCGTATCGATTCACACAACAAGATTCTGTACGCACGGCATGCAGACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTCAGTAGACCTGAACACAATGGCCAGTGCTTTCAAGACTAGTGTAACAGGGTTGGAGAAAGAGCTAGCTGCACTTATTACGGAAAATCAGATCCAGgtacattccagagcattttactgtcaaagtcacttgtttcgctgtgtagtgatttctttctacactcgcatttttagagaaggcgttggatctctgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC