Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaaccattcatttctcttgtttcgttttccaacagctcctaagatgtttgatctatcgcgggtcaagtattaattggtgaagttggacttgttctttggattctcag

Basic information

species Physcomitrella patens
transcript PP1S31_322V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 5
AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaaccattcatttctcttgtttcgttttccaacagctcctaagatgtttgatctatcgcgggtcaagtattaat--tggtgaagttggacttgttctttggattctcag
|| |||||  |||||||  | ||  | ||||||||| ||||||| |||||||| || ||||| || |||||||||||| |  | ||     |    |  ||| |  |  ||    || | |  |  |     |         | |||  ||||     ||    | | ||  | ||| ||  | ||   |||  | || |  | |||||      
AAGAGGGCCTCCAAGATCAGGAAGCTCTTCAACCTTTCCAAGGATGATGATGTCCGCAAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAATGgtgagctttcctgcaatgtttaataatctacctc------atttctagtatgtc----ctgctcctgatct-gcattgatcttagtactgttttaattttcttatggataa----

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 4
AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaaccattcatttctcttgtttcgttttccaacagctcctaagatgtttgatctatcgcgggtcaagtattaattggtgaagttggacttgttctttggattctcag
|| |||||  |||||||  ||||  |||||||||||| |||||| |||||||| || || ||||||||||| |||||| |  | ||     |    |  ||| |  |  || | |||    ||    | |  || |||   ||  | | |   | ||| |  |   |||   || |  |  | |    |   |  ||     || ||      
AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagctt-ccttgcatcaaactgcagttgaatttcaatgtcttgttaaag--tagatttgactttggttgggt-tcgacagtttgtctcccaagtgcc---tgcat------

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 5
AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaaccattcatttctcttgtttcgttttccaacagctcctaagatgtttgatctatcgcgggtcaagtattaattggtgaagttggacttgttctttggattctcag
|| |||||  |||||||  ||||  |||||||||||| |||||| |||||||| || || ||||||||||| |||||| |  | ||     |    |  ||| |  |  || | |||    ||    | |  || |||    || |   |   | ||  |  |   |||   || |  |  | |    |   |  || |   || ||      
AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagctt-ccttgcatcaaactgcagttgaatttcaatg--tcttggtaaagtagacttgactttggttgggt-tcgacagtttgtctcccaagtgct---tgcat------

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G048770_T01 (Zea mays), 5'ss of exon 1
AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTG-TATCTGCTACAGgtaatttaacc---attcatttctcttgtt-tcgttttccaaca-gctcctaa--gatgtttgatctatcgcgggtcaagtattaattggtgaagttggacttgttctttggattctcag
|| |||||  |||||||| | || |||||||||||| ||||||| |||||||| || || ||||||||||  ||| ||    | ||   || |    ||||  |  ||  |    ||  | ||   ||| | | || || ||    ||| |||   |  |||  |||| |||      | || || |   || || ||  |  | ||              
AAGAGGGCCTCCAAGATTAGGAAGTTGTTCAACCTTTCCAAGGATGATGATGTACGCAAGTACGTGAACATATACGGCAAGACATTCACTACCAATAACAgtgagcttttcttgtatctaattgcattgctattgtatttcagtgtgcttctagctgcagttcaatctctcg------atgtcttgaa-agtaaacttaaatgtctt--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251234|gb|FC428513.1|FC428513
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|22491706|gb|BU051629.1|BU051629
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162202121|gb|FC377522.1|FC377522
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208368867|gb|DC947425.1|DC947425
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162275507|gb|FC451275.1|FC451275
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162268717|gb|FC445214.1|FC445214
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|18334943|gb|BJ166961.1|BJ166961
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208352202|gb|DC906305.1|DC906305
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162247833|gb|FC423413.1|FC423413
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37826978|gb|BJ584990.1|BJ584990
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67694383|gb|BJ954616.1|BJ954616
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162247834|gb|FC423414.1|FC423414
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162237536|gb|FC413008.1|FC413008
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162220963|gb|FC396148.1|FC396148
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37852953|gb|BJ610961.1|BJ610961
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208394902|gb|DC920189.1|DC920189
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208351203|gb|DC922038.1|DC922038
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67719729|gb|BJ969988.1|BJ969988
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162237537|gb|FC413009.1|FC413009
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCANAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208344627|gb|DC912573.1|DC912573
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCANAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37830245|gb|BJ588257.1|BJ588257
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162231478|gb|FC407928.1|FC407928
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208389256|gb|DC933284.1|DC933284
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162231479|gb|FC407929.1|FC407929
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCANAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162275508|gb|FC451276.1|FC451276
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208348680|gb|DC926355.1|DC926355
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162251233|gb|FC428512.1|FC428512
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67727995|gb|BJ978254.1|BJ978254
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|22132976|gb|BQ827466.1|BQ827466
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162269830|gb|FC445373.1|FC445373
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|7583197|gb|AW699361.1|AW699361
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208397139|gb|DC908153.1|DC908153
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67728115|gb|BJ978374.1|BJ978374
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|208367071|gb|DC935913.1|DC935913
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162222642|gb|FC397454.1|FC397454
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCANAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67701563|gb|BJ961796.1|BJ961796
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|18325052|gb|BJ157048.1|BJ157048
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCA
EST: gi|208393560|gb|DC949722.1|DC949722
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|18333015|gb|BJ165029.1|BJ165029
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162262634|gb|FC438962.1|FC438962
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162229718|gb|FC405146.1|FC405146
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162279395|gb|FC455511.1|FC455511
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162229719|gb|FC405147.1|FC405147
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCANAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67722349|gb|BJ972608.1|BJ972608
EST:     GCTCGTTTGTNTTTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: GCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162276604|gb|FC452182.1|FC452182
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|18332665|gb|BJ164678.1|BJ164678
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37829892|gb|BJ587904.1|BJ587904
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162279396|gb|FC455512.1|FC455512
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162276605|gb|FC452183.1|FC452183
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162222641|gb|FC397453.1|FC397453
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37829252|gb|BJ587264.1|BJ587264
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|7207393|gb|AW561395.1|AW561395
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37839591|gb|BJ597599.1|BJ597599
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67578654|gb|BJ950821.1|BJ950821
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162202122|gb|FC377523.1|FC377523
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCANAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37852243|gb|BJ610251.1|BJ610251
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162269829|gb|FC445372.1|FC445372
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37843687|gb|BJ601695.1|BJ601695
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162262633|gb|FC438961.1|FC438961
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162220964|gb|FC396149.1|FC396149
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|67719854|gb|BJ970113.1|BJ970113
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37850917|gb|BJ608925.1|BJ608925
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|37831440|gb|BJ589452.1|BJ589452
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
EST: gi|162268716|gb|FC445213.1|FC445213
EST:     TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAG                         GAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA
genomic: TGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 21

AAAAGGGCTACCAAGATTCGAAAATTGTTCAACCTTACCAAGGAGGATGATGTGCGAAAATACGTGAACACCTACCGCCGCTCGTTTGTATCTGCTACAGgtaatttaac ... ggattctcagGAAAGAAGCGCAGCAAAGCTCCCAAAATTCAGAGGCTTGTGACTCCTCTTACTTTGCAGCGGAAGCGCCGAAGAATTGCTATCAAGAAGGAAAGAGTTGC




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