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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTATCAAGCTGCTACACTTTTCGTGTCGGGGCCCTTCCTGGATGCTGCCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcatattatcagccgcctcgaacattaacgtcaaccgagtgaaaagctgtttttgcattcttgtacgatgagagctgcagaacgcatgtaatat...

Basic information

species Physcomitrella patens
transcript PP1S311_78V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385383|gb|DC953044.1|DC953044
EST:     CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
EST: gi|208370432|gb|DC952135.1|DC952135
EST:     CC-TGACCAACAGGAANGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
EST: gi|208364189|gb|DC950425.1|DC950425
EST:     CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
EST: gi|15262207|gb|BI437517.1|BI437517
EST:     CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
EST: gi|208373626|gb|DC952451.1|DC952451
EST:     CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
EST: gi|37845882|gb|BJ603890.1|BJ603890
EST:     CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTG                         TTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG
genomic: CCTTGACCAACAGGAACGTATTCAGTTTCGACTACAACTCATTCGTTTTGgtaagtgcat ... tgggtgccagTTCTTCATCGTGCTTTCGTGTCTCATATCTGTATCAGTTAACTTCAGCACG