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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGAGAATCGGAAGACTTGTTCTCCGTGTTATCCTCGCCAGGGACGATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacgctattttaacaagttgctttggtcggcgtaaatgatggtgatcttcgatctcgacaattcagttccccttcaccgtcgtgtcaaagtggattcgtgagactgtgaattgatacgtaaatctgtgctgcag

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162180712|gb|FC357797.1|FC357797
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: gi|208362133|gb|DC943532.1|DC943532
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: gi|162156177|gb|FC332552.1|FC332552
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: gi|18328635|gb|BJ160640.1|BJ160640
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: gi|162268832|gb|FC445680.1|FC445680
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGGCTTCTAAAGTCTGAGGTG
EST: gi|18330269|gb|BJ162275.1|BJ162275
EST:     ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATG                         GCGTACATGTTGAAGTACGATTCTACTCACGGG
genomic: ATGTCGAAGTCGTTGCCGTGAACGATCCCTTCATTGACACCAAGTACATGgtacgtgacg ... tgtgctgcagGCGTACATGTTGAAGTACGATTCTACTCACGGG