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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACGTGAAACTGTACACGTATCAGATATGCCGATCACTGGCATATATCCACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTGgtacgtgtgtccgacgaatcttgtcatgtgttcaagtatcttgaaaacacgatgctgactgtttaagcactcgtatttgttgctcggcatgggtggaagctggttactgagatgtttggtatgagtcacgggaaagtacaggagttgccgtggtgtcgtaacaaacttgtgtttgcatggcacag

Basic information

species Physcomitrella patens
transcript PP1S306_43V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196892|gb|FC373297.1|FC373297
EST:     ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTG                         GTGAATCCTCATACGCACCAGCTGAAACTGTGTGA
genomic: ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTGgtacgtgtgt ... catggcacagGTGAATCCTCATACGCACCAGCTGAAACTGTGTGA
EST: gi|100387363|gb|BY970507.1|BY970507
EST:     ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTG                         GTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA
genomic: ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTGgtacgtgtgt ... catggcacagGTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA
EST: gi|100389546|gb|BY989024.1|BY989024
EST:     ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTG                         GTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA
genomic: ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTGgtacgtgtgt ... catggcacagGTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA
EST: gi|100449000|gb|CJ973299.1|CJ973299
EST:     ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTG                         GTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA
genomic: ACAATGGCATCGGTGTCTGCCACCGCGACATCAAGCCCCAGAACCTGCTGgtacgtgtgt ... catggcacagGTGAATCCTCATACGCACCAGCTGAAACTGTGTGATTTTGGAAGTGCGAAA