1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTTCAAGCACTACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacgatggttattaatattaatattacatattttttaacttttaattttaaaattttattacaacgttgttatggtttctattgggcactggacc...
species | Physcomitrella patens |
transcript | PP1S300_7V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTT TATGAGCTTCTTGACGAGATGATGGATTTEST: gi|162174997|gb|FC350896.1|FC350896
genomic: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacga ... aatcatgcagTATGAGCTTCTTGACGAGATGATGGATTT
EST: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTT TATGAGCTTCTTGACGAGATGATGGATTTTGGATATCCTCAATACACAGAAEST: gi|208365562|gb|DC935715.1|DC935715
genomic: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacga ... aatcatgcagTATGAGCTTCTTGACGAGATGATGGATTTTGGATATCCTCAATACACAGAA
EST: ACTTTGAGGAGTCGGAAGAAGAGTCTCTGCGTGACANTTTTGTCGTTGTT TATGAGCTTCTTGACGAGATGATGGATTTTGGATATCCTCAATACACAGAAEST: gi|208373011|gb|DC940642.1|DC940642
genomic: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacga ... aatcatgcagTATGAGCTTCTTGACGAGATGATGGATTTTGGATATCCTCAATACACAGAA
EST: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTT TATGAGCTNCTTGACGAGATGATGG
genomic: ACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacga ... aatcatgcagTATGAGCTTCTTGACGAGATGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCAAGCACTACTTTGAGGAGTTGGAAGAAGAGTCTCTGCGTGACAATTTTGTCGTTGTTgtaagtacgatggttattaatattaatattacatattttttaacttttaattttaaaattttattacaacgttgttatggtttctattgggcactggacc
- - - - - - - - - GAGGAG
- - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - AAGAAG