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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAAAGAGGAGTTGGGAGCAACTGGGCATGATCCAATCTCCCCTGAGTTTGCAGTTGTCCAAGACGCAGACCGCCTTGATGCAATTGGTGCCATTGgtaagttgacaccttcctaatttcatatctctaaattttcatgcaactctattagatgatcaaggcttccttgttgcatcacctcgagttatagatcaca...

Basic information

species Physcomitrella patens
transcript PP1S2_70V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_70V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: LOC_Os10g34470.1 (Oryza sativa), 5'ss of exon 5
GGTTCAAAGA-GGAGTTGGGAGCAACTGGGCATGATCCAATCTCCCCTGAGTTTGCAGTTGTCCAAGACGCAGACCGCCTTGATGCAATTGGTGCCATTGgtaagt-tgacaccttcctaatttcat-atct-ctaaattttcatgcaactctattagatgatcaaggcttccttgttgcatcacctcgagttatagatcaca
| |||||| | | ||||   |  || |  |  || |       | | |||||||||| |||| ||||| ||||| || ||||||||||||||||| ||||| ||||    ||    |  | |||| | |||  ||  | |   |   |  |   ||  |  || | |      |   ||   |||      |   | |||   
GATTCAAAAATGAAGTTTCAAAGAAGTCTGT-TGTTGAGCCTACTCTTGAGTTTGCAATTGTACAAGATGCAGATCGTCTTGATGCAATTGGTGCAATTGgcaagtactgcataaccgaagtttctttatcagctctactcaaacaaagtttccttcaacaattaggatgcagtaaatgttgcactggttatgcaaaatc---

upper sequence: PP1S2_70V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv01s0011g02070.t01 (Vitis vinifera), 5'ss of exon 5
GGTTCAAAGAGGAGTTGGGAGCAACTGGGCATGATCCAATCTCCCCTGAGTTTGCAGTTGTCCAAGACGCAGACCGCCTTGATGCAATTGGTGCCATTGgtaagttgacaccttcctaatttcatatctctaaattttcatgcaactctattagatgatcaaggcttccttgttg-catcac-ctcgagttatagatcaca-
| |||||||||||  | | ||    ||   ||| |  |    | || |||||||  ||||| ||||| || || |||||||||||||||||||| |||||||||||   |  ||    | | | |   | | | |  ||||   ||     || |     ||  |||  | || |  |  ||  | |  || |   |   | 
GTTTCAAAGAGGAACTTGCAGGGTTTGCTAATGGTGAATATCCTCCAGAGTTTGGGGTTGTACAAGATGCTGATCGCCTTGATGCAATTGGTGCAATTGgtaagttttgaattttacgagtgctttaatttga-tagtcatttgacctatctaaa--gctaaaacttgatagtagataaaacattaggattgtgattggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829669|gb|BJ587681.1|BJ587681
EST:     GTTTGCAGTTGTCCAAGACGCAGACCGCCTTGATGCAATTGGTGCCATTG                         GGATTGCCAGGTGTTTTACTTATGGGGGAAGCCATAATCGCAGGATGCATG
genomic: GTTTGCAGTTGTCCAAGACGCAGACCGCCTTGATGCAATTGGTGCCATTGgtaagttgac ... tctggtgcagGGATTGCCAGGTGTTTTACTTATGGGGGAAGCCATAATCGCAGGATGCATG