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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGAAGTGCCCCTACCGACAGTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtctgtccaagtcggaaccaaagattaattctggtgagggttagattttgcttcaatgaagttcagccagttgatgattattttccttcttacctgaaggtataaattggtgatagaacttgtttggagagtgcag

Basic information

species Physcomitrella patens
transcript PP1S295_30V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354202|gb|DC957422.1|DC957422
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|100414507|gb|BY992807.1|BY992807
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|162260165|gb|FC436300.1|FC436300
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208363026|gb|DC946909.1|DC946909
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCCATCTATTTCACTCAG                         GCNTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208385598|gb|DC937143.1|DC937143
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTNGCATCTGGATCTACTTGTGGTTCTCTC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTC
EST: gi|208367886|gb|DC950953.1|DC950953
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|162278111|gb|FC453930.1|FC453930
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208377957|gb|DC910961.1|DC910961
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208375008|gb|DC956404.1|DC956404
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208374777|gb|DC932046.1|DC932046
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|162278110|gb|FC453929.1|FC453929
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208349948|gb|DC913656.1|DC913656
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208361176|gb|DC954282.1|DC954282
EST:     CCGATGTTTCCCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: CCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208390738|gb|DC937894.1|DC937894
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCAA-CGCTCTCGT
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGT
EST: gi|100364489|gb|BY984629.1|BY984629
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GGCTTGCATCTGGATCTACCTGTGGTTCTCTCCTAGCGCTCT
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagG-CTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCT
EST: gi|162260166|gb|FC436301.1|FC436301
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|18361916|gb|BJ193983.1|BJ193983
EST:     TCTCCGGCCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATC
genomic: TCTCCGGCC-GATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATC
EST: gi|208386340|gb|DC932836.1|DC932836
EST:     GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
EST: gi|208387111|gb|DC941283.1|DC941283
EST:     GTCTCCGGCCGATGTTTCCCATCATAAATGCCGCAATCTATTTCACTCAG                         GCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC
genomic: GTCTCCGGCCGATGTTTCTCATCATAAATGCCGCAATCTATTTCACTCAGgtctgtgtct ... gagagtgcagGCTTGCATCTGGATCTACTTGTGGTTCTCTCCTAGCGCTCTCGTGATGTGC