1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgctgttgcactaaaattccatttcgtctttgcatatcctttgagttatttatgtatccatccacgtatccacttatgtgagcgaccataatg...
species | Physcomitrella patens |
transcript | PP1S269_15V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAG ATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGGCATGTEST: gi|162194348|gb|FC369532.1|FC369532
genomic: ATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgc ... tgatgttcagATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGGCATGT
EST: -TACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGGG ATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGGGCATGEST: gi|100376652|gb|BY949399.1|BY949399
genomic: ATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgc ... tgatgttcagATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGG-CATG
EST: ACTTTAGATGCACGCTTGGGAAAGT-GTGTTCA-GCAGCAGTTGCCTGAG ATCCCGAA-GCGTTTATTCCCCCTCAG-CGGGCAAGCAGGTGCCCTAG-CAEST: gi|208396033|gb|DC915793.1|DC915793
genomic: ACTTTAGATGCACGCTTGG-AA-GTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgc ... tgatgttcagATCC-GAAAGCGTTTATTCCCC-TCAGGCGGGCAAGCAGGTGCC-TAGGCA
EST: ATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAG ATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGGCATGT
genomic: ATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgc ... tgatgttcagATCCGAAAGCGTTTATTCCCCTCAGGCGGGCAAGCAGGTGCCTAGGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAGgtaggtccgctgttgcactaaaattccatttcgtctttgcatatcctttgagttatttatgtatccatccacgtatccacttatgtgagcgaccataatg
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