1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTGAGTGTATCGAACCCTGAAACGCGTGTAGATGATGCCGAGTTCGAGGAAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctatcagtataccactcgctgcactggattatttttcaccatacaagtttgtcgagaacttctaagaactatgctaaaaggccaggcttttgta...
species | Physcomitrella patens |
transcript | PP1S264_34V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|67726166|gb|BJ976425.1|BJ976425
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162241037|gb|FC416668.1|FC416668
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162255462|gb|FC431876.1|FC431876
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162180761|gb|FC357846.1|FC357846
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162236928|gb|FC412879.1|FC412879
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162236927|gb|FC412878.1|FC412878
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: ATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|162180762|gb|FC357847.1|FC357847
genomic: ATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGACEST: gi|67697855|gb|BJ958088.1|BJ958088
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
EST: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAG CCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
genomic: AAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctat ... tccgatgcagCCCAAGTTGTTAGATGAGAAGCAGACCACAGTGTATAAGAGGGCTGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAGTGTATCGAACCCTGAAACGCGTGTAGATGATGCCGAGTTCGAGGAAAACGAGGTCTATGCAATTGACATCGTGACCAGTACGGGTGATGGAAAGgtattcctatcagtataccactcgctgcactggattatttttcaccatacaagtttgtcgagaacttctaagaactatgctaaaaggccaggcttttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA