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CCACGCATAGAGGGCGTCGTTCTATCAATTGAGCCCTTGGCCTGTGGTTGGGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaaccttttccagttaatttgctgaaactgccctactttctccacttatcgcttcttcccagaggataatctacatattttgaggatcccttttc...
species | Physcomitrella patens |
transcript | PP1S25_21V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACTEST: gi|162197312|gb|FC372274.1|FC372274
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACTEST: gi|162168391|gb|FC344705.1|FC344705
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACTEST: gi|162158571|gb|FC334574.1|FC334574
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACTEST: gi|162181980|gb|FC356851.1|FC356851
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACTEST: gi|162153222|gb|FC329004.1|FC329004
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
EST: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCG GCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
genomic: GGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaacc ... ttggatgcagGCAAGTTCTTGGTAGGCTATATGCCAGTTGGTGGAGAGAAGGAGTACTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGCATAGAGGGCGTCGTTCTATCAATTGAGCCCTTGGCCTGTGGTTGGGGAAAGCTTGATGAAATCCGACGACACATGGAATATTACAAGCAATCCGgtacgtaaccttttccagttaatttgctgaaactgccctactttctccacttatcgcttcttcccagaggataatctacatattttgaggatcccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA