1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATATTTCATCTTTAACCACCTCAGCTTCGTAGTGTATTATCATCAAGATCCTGTTTCCACAGCTTCTCGAATTGTTGGCTTTGAAGTGGCTCCTCAGAGgtctgtcatctgatacatccaaatgatctctagctgttcgttgaaagatagaggctctgacatgctcttctgactccttatgaatggttcattctgatgt...
species | Physcomitrella patens |
transcript | PP1S24_182V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGTTTCCACAGCTTCTCGAATTGTTGGCTTTGAAGTGGCTCCTCAGAG TGTGAAACACGAGTATGAAGCTTGGGAAGGCGAGAAGACCAAGTTGAAGTCEST: gi|100405258|gb|BY955435.1|BY955435
genomic: CCTGTTTCCACAGCTTCTCGAATTGTTGGCTTTGAAGTGGCTCCTCAGAGgtctgtcatc ... gatgatgtagTGTGAAACACGAGTATGAAGCTTGGGAAGGCGAGAAGACCAAGTTGAAGTC
EST: CCTGTTTCCACAGCTTCTCGGATTGTTGGCTTTGAAGTGGCTCCTCAGAG TGTGAAACACGAGTATGAAGCTTGGGAAGGCGA
genomic: CCTGTTTCCACAGCTTCTCGAATTGTTGGCTTTGAAGTGGCTCCTCAGAGgtctgtcatc ... gatgatgtagTGTGAAACACGAGTATGAAGCTTGGGAAGGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATTTCATCTTTAACCACCTCAGCTTCGTAGTGTATTATCATCAAGATCCTGTTTCCACAGCTTCTCGAATTGTTGGCTTTGAAGTGGCTCCTCAGAGgtctgtcatctgatacatccaaatgatctctagctgttcgttgaaagatagaggctctgacatgctcttctgactccttatgaatggttcattctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC