1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTCGTCATTTGGAAAAGGGCAGAGTTGTCATCTTCGGTGCTGGCACAGGCAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaagcatattgactacaagaattttgattcatggattatctcctctcatcgcaacgctgcttcaatagcgtgttttagtagttatgattctgctggtttgtgcaaattgcgtcattatctaacattgttttggctgtgtggactcacag
species | Physcomitrella patens |
transcript | PP1S241_40V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAA TTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATTEST: gi|37837246|gb|BJ595254.1|BJ595254
genomic: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaa ... ggactcacagTTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
EST: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAA TTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATTEST: gi|208357194|gb|DC926541.1|DC926541
genomic: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaa ... ggactcacagTTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
EST: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAA TTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATTEST: gi|208365430|gb|DC950897.1|DC950897
genomic: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaa ... ggactcacagTTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
EST: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAA TTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATTEST: gi|162254002|gb|FC430636.1|FC430636
genomic: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaa ... ggactcacagTTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
EST: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAA TTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
genomic: CAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaa ... ggactcacagTTGGTGCAGAGGTGGTGCTGAAAGCAACAAACGTGGACGGTGTGTATGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGTCATTTGGAAAAGGGCAGAGTTGTCATCTTCGGTGCTGGCACAGGCAACCCATTCTTCACTACAGATACCGCAGCTGCCCTTCGAGCTGCTGAAAgtaagagcaagcatattgactacaagaattttgattcatggattatctcctctcatcgcaacgctgcttcaatagcgtgttttagtagttatgattctgctggtttgtgcaaattgcgtcattatctaacattgttttggctgtgtggactcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT