1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTTATTACAATTGGGCCATAGCAATATCCGATCGTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaattaaatcctttgtgcatgaattattattatttgaagacattcagtagtccttacgtaatttgtatccgctcgtgaagtacataattggttcttgtgtttttatcatgtattttcagttgtgtcattacttgagatacagcctaatatctggtttgttgtttag
species | Physcomitrella patens |
transcript | PP1S230_71V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAG GCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAGEST: gi|162182838|gb|FC358935.1|FC358935
genomic: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaatt ... tgttgtttagGCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
EST: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAG GCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAGEST: gi|162179307|gb|FC356256.1|FC356256
genomic: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaatt ... tgttgtttagGCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
EST: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAG GCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAGEST: gi|100411961|gb|BY992425.1|BY992425
genomic: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaatt ... tgttgtttagGCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
EST: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAG GCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAGEST: gi|162181084|gb|FC357568.1|FC357568
genomic: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaatt ... tgttgtttagGCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
EST: GTGCTAAGATTATGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAG GCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
genomic: GTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaatt ... tgttgtttagGCGTGTGATAGATACGACCGGGCTGTGCAATTGAACTGGAACAGTCCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTATTACAATTGGGCCATAGCAATATCCGATCGTGCTAAGATTAGGGGCCGCACCAAGGAAGCCGAAGACCTCTGGAAACAGgtttgtaattaaatcctttgtgcatgaattattattatttgaagacattcagtagtccttacgtaatttgtatccgctcgtgaagtacataattggttcttgtgtttttatcatgtattttcagttgtgtcattacttgagatacagcctaatatctggtttgttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA