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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCGTAAGGACACACTCACGGAAGACGAATCCAGATTTTATGTTGGACAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAGgtacttgagagtgtaattgcgatccctggttagttatttggtcttaacttctattttgtgtgtgacatactcaattcgatcaacagaatattctttggga...

Basic information

species Physcomitrella patens
transcript PP1S22_429V6.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 5
TCATGCGTAAGGACACACTCACGGAAGACGAATCCAGATTTTATGTTGGACAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAGgtacttgagagtgtaattgcgatccctggttagttatttggtcttaacttctattttgtgtgtgacatactcaattcgatcaacagaatattctttggga
| ||| | || ||||| ||||| ||||||||  |||| |||||| ||||  ||  ||| |||||||| ||||| ||||| || |||||||||||||| ||||   |||    | |  |  |||      ||||||   | |     | |  ||||||||     || |  |   |||   |||    |||          
TTATGAGGAAAGACACCCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTACATTCACAGgtcagtgaagcagaatatatgat------ttagtt--ctagctcccattgttattttgttctaaacgtctttttttct-ccaatgtgatacag-------

upper sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 4
TCATGCGTAAGGACACACTCACGGAAGACGAATCCAGATTTTATGTTGGACAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAGgtacttgagagtgtaattgcgatccctggtta---gttatttggtcttaacttctattttgtgtgtgacatactcaattcgatcaacagaatattctttggga---------------
||||| | ||||| ||  | || ||||| ||  | ||||||||||||||| ||   ||| ||||||| || || ||||||||||| || |||||||||||||   |  | |     ||    |   ||| ||   || | ||||  | |   |  |  | || | | |   |  ||     || |  |   | |||| |   |               
TCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGgtttgtagggg-acctttattctttttggctatatgtaacttggcatgattctagaggtcgtttcttattgatacaccaaaatgattaattttttctatcccaaattgcatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162170612|gb|FC347108.1|FC347108
EST:     CAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAG                         AGATATCANACCGGACAACTTTGCTGT-AGATAAGAATGGGCACATGAAGT
genomic: CAATGTGTTCTGGCTATCGAGTCAATTCACAAACACAACTACATTCATAGgtacttgaga ... tgtgtaccagAGATATCAAACCGGACAACTT-GCTGTTAGATAAGAATGGGCACATGAAGT