Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAATTGTCTGAAACAGTTAACTCTCTCTTAGCGCTGCGTGTTGTTCCCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtatttctcttcactttttgaatggtacggcgaaattcagtttgaatgtacttctcctggaatcatccaatgagtgtatgggctgtttgtcagcgt...

Basic information

species Physcomitrella patens
transcript PP1S22_40V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100369280|gb|BY948029.1|BY948029
EST:     CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTT                         GATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA
genomic: CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA
EST: gi|208355557|gb|DC906565.1|DC906565
EST:     CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTT                         GATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA
genomic: CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA
EST: gi|18328179|gb|BJ160183.1|BJ160183
EST:     CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTT                         GATTCGACAGGCATCTTTTGGG
genomic: CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGG
EST: gi|100436607|gb|BY961302.1|BY961302
EST:     CCATATTTTATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTT                         GATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGNCG-CTCTTCTCGC
genomic: CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGGATAATGATTCGTTGG-CGGCTCTTCTCGC
EST: gi|208381231|gb|DC903065.1|DC903065
EST:     CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTT                         GATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA
genomic: CCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 28 (upstream exon), 21 (downstream exon)
Score: 7

GCAGCAATTGTCTGAAACAGTTAACTCTCTCTTAGCGCTGCGTGTTGTTCCCATATTTAATGAGAACGATGCAATCAGCACGAGGAAGTCGCCTTATTTTgtacgtattt ... attctttcagGATTCGACAGGCATCTTTTGGGATAATGATTCGTTGGCGGCTCTTCTCGCACTGGAATTACAAGCTGATCTTCTTATTTTATTAAGTGATGTGGAAGGCC




<











<


<