1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCCAATGGTTCAGTTTTCCTATTGCACGCTTGTGCACACAACCCGACTGGTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgttcccgttccaggttatgtggtgtgtactagttgcctgtcgtagcgaatgcattttttgaggaggctacgacgtattgcttagtttatgtacggaagtccgactgtagtgttcaatcccttaatgctctgttgttggagctctaatttttcttttggcatgtatggttgcag
species | Physcomitrella patens |
transcript | PP1S223_31V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCATTTTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162256780|gb|FC432674.1|FC432674
genomic: TGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|19789721|gb|BQ041471.1|BQ041471
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162221032|gb|FC398284.1|FC398284
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTGTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162274186|gb|FC449946.1|FC449946
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162257990|gb|FC434084.1|FC434084
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162192506|gb|FC371697.1|FC371697
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTGTTTAAG GAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCCEST: gi|162198689|gb|FC373470.1|FC373470
genomic: GTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCATACCAAGGGTTTGCTTCC
EST: TGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTGTTTTA-G GAAAAAGGCCATTTCGCCCTTTTTGACATGGCAT
genomic: TGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATT-TTTTAAGgtaatcctgt ... atggttgcagGAAAAAGGCCATTTCGCCCTTTTTGACATGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAATGGTTCAGTTTTCCTATTGCACGCTTGTGCACACAACCCGACTGGTGTAGACCCATCTCCAGAGAACTGGAAGGAGATTTCTGCATTTTTTAAGgtaatcctgttcccgttccaggttatgtggtgtgtactagttgcctgtcgtagcgaatgcattttttgaggaggctacgacgtattgcttagtttatgtacggaagtccgactgtagtgttcaatcccttaatgctctgttgttggagctctaatttttcttttggcatgtatggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT