1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GACGATAATAGTCCCACTCGTAGGCTGTTTTACTTGGCCTTGCCTCCTTCAGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttcctgcttctcgcacttctctttaagtgtggctcttttgaaatctactctttatcctggtaacaggttgatgatttaagttctgattcgtat...
species | Physcomitrella patens |
transcript | PP1S222_130V6.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCANA GAGGATGGACCAGAGTGATTGTAGAANAGCCTTTTGGGAAGGACTTGGAATEST: gi|162170244|gb|FC347364.1|FC347364
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAATEST: gi|162220370|gb|FC395738.1|FC395738
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCANA GAGGATGGACCAGAGTGATTGTAGAANAGCCTTTTGGGAAGGACTTGGAATEST: gi|162196667|gb|FC374632.1|FC374632
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAATEST: gi|162257683|gb|FC433610.1|FC433610
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCANA GAGGATGGACCAGAGTGATTGTAGAANAGCCTTTTGGGAAGGACTTGGAATEST: gi|162263641|gb|FC440125.1|FC440125
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAATEST: gi|162168431|gb|FC344407.1|FC344407
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCANA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAATEST: gi|162149665|gb|FC326716.1|FC326716
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAATEST: gi|162162513|gb|FC338607.1|FC338607
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
EST: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAA GAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
genomic: AGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttc ... ttccctacagGAGGATGGACCAGAGTGATTGTAGAAAAGCCTTTTGGGAAGGACTTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGATAATAGTCCCACTCGTAGGCTGTTTTACTTGGCCTTGCCTCCTTCAGTCTATCCGCTTGTGAGCAAGCAGATTCGGAAGCACTGCATGAATCAAAgtacggtttcctgcttctcgcacttctctttaagtgtggctcttttgaaatctactctttatcctggtaacaggttgatgatttaagttctgattcgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT