1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCACTTCATCAGTCACGTGTTGGCTTTCTTCGCAGCGTCTGATGGTATCGTGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggaccacaacccactctgctttcactctcttgaatgcctgatttgattccgaacttgaaatcatattatatgctgttgctgaaactagattttaatccatttttcgagtgcag
species | Physcomitrella patens |
transcript | PP1S215_91V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGAGAACCTGGCCGTGCGCTTTCATGAA-GAGATTCAAATACNNCGAG -CCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAEST: gi|162209778|gb|FC385712.1|FC385712
genomic: CTTGAGAACCTGGCCGTGCGCTT-CATGAAAGAGATTCAAATACC-CGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGA
EST: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAG GCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAEST: gi|162262142|gb|FC437911.1|FC437911
genomic: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
EST: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAG GCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
genomic: TGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggacca ... tcgagtgcagGCCAGAGCATTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACTTCATCAGTCACGTGTTGGCTTTCTTCGCAGCGTCTGATGGTATCGTGCTTGAGAACCTGGCCGTGCGCTTCATGAAAGAGATTCAAATACCCGAGgttaggaccacaacccactctgctttcactctcttgaatgcctgatttgattccgaacttgaaatcatattatatgctgttgctgaaactagattttaatccatttttcgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA