1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTATCAAATTTGTGCTGGCGGGTGCCAATATCATGTGCCCGGGACTGACATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcagttacttatttttgtttgcttttcctttttctttttctttaaaaaaaaaaatcatagtaatgtatccgtgtgtggggataatcagctttattgtattataaatgattgactaatggtattattgttccatcag
species | Physcomitrella patens |
transcript | PP1S215_25V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|18356615|gb|BJ188674.1|BJ188674
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208345629|gb|DC909299.1|DC909299
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|162259779|gb|FC436759.1|FC436759
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208363408|gb|DC947006.1|DC947006
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: AGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|18343486|gb|BJ175524.1|BJ175524
genomic: AGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|22132705|gb|BQ827296.1|BQ827296
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|18357148|gb|BJ189207.1|BJ189207
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAEST: gi|208371667|gb|DC932496.1|DC932496
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATA
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|162259765|gb|FC436758.1|FC436758
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|162221749|gb|FC397081.1|FC397081
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|67578005|gb|BJ950172.1|BJ950172
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|37822681|gb|BJ580747.1|BJ580747
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208365150|gb|DC946779.1|DC946779
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|22492644|gb|BU052567.1|BU052567
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208354986|gb|DC914250.1|DC914250
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|162228094|gb|FC404649.1|FC404649
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208382460|gb|DC927994.1|DC927994
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|7584206|gb|AW700103.1|AW700103
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: GCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208395953|gb|DC915713.1|DC915713
genomic: GCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTNATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|18350245|gb|BJ182296.1|BJ182296
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|67693833|gb|BJ954066.1|BJ954066
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|208382492|gb|DC923162.1|DC923162
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|18332428|gb|BJ164441.1|BJ164441
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGEST: gi|162221748|gb|FC397080.1|FC397080
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
EST: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTG GCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
genomic: CATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcag ... gttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTATCAAATTTGTGCTGGCGGGTGCCAATATCATGTGCCCGGGACTGACATCTGCTGGTGGTAATCTCGATGAAGAAGTGCCTGCAGATTCACCTGTGgtgagctcagttacttatttttgtttgcttttcctttttctttttctttaaaaaaaaaaatcatagtaatgtatccgtgtgtggggataatcagctttattgtattataaatgattgactaatggtattattgttccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT