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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTCACACTGTGGTACCGAGCTCCCGAAGTTCTTCTCGGAGCAACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaacgcacgtatcttagtatatgatagggaatatcgtttgtccatgattcatttctgatctaagtcgttatcctttagattgcttcttattccgactactgtttgtccag

Basic information

species Physcomitrella patens
transcript PP1S214_1V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S214_1V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT1G20930.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCGTCACACTGTGGTACCGAGCTCCCGAAGTTCTTCTCGGAGCAACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaacgcacgtatcttagtatatgatagggaatatcgtttgtccatgattcatttctgatctaagtcgttatcctttagattgcttcttattccgactactgtttgtccag
||  | || || |||||  ||||||| ||||||||||| ||||||||||| |||||   |   || ||||| ||||||||||| |||||||| ||||  ||||       |||||    ||        | | ||  | ||    | |  || ||      |||   | |   ||| | || ||| ||  |  |                
ATTCTAACTCTATGGTATAGAGCTCCGGAAGTTCTTCTTGGAGCAACCCATTACTCTACTGGAGTGGATATGTGGTCTGTTGGCTGTATTTTTGgta--caaa-------atcttctcttac-------agtttcactggtttcagttcaatgtcactagcaagaactaacagttttgtttcctttttgatgtgtag-------------

upper sequence: PP1S214_1V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT2G38620.1 (Arabidopsis thaliana), 5'ss of exon 1
------ATCGTCACACTGTGGTACCGAGCTCCCGAAGTTCTTCTCGGAGCAACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaacgcacgtatcttagtatatgatagggaatatcgtttgtccatgattcatttctgat-ctaagtcgttatcctttagattgcttcttattccgactactgtttgtccag
      || || || || |||||  ||||||| |||||| | || ||  | || || |||||   | ||||||||||||||||||||||||| || || ||| || || |    |   ||  || | |  ||  |    |   || | |    |  ||| |||||  |    | || |  | |||                                
CATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGTTCTACTCATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGgttagtaatca---gctactatgtctcttttaatggtcttttgttctactgtttggattactgatgtttccccatttttttgtag--------------------------------

upper sequence: PP1S214_1V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ06603 (Selaginella moellendorffii), 5'ss of exon 5
ATCGTCACACTGTGGTACCGAGCTCCCGAAGTTCTTCTCGGAGCAACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaacgcacgtatcttagtatatgatagggaatatcgtttgtccatgattcatttctgatctaagtcgttatcctttagattgcttcttattccgactactgtttgtccag
||||| ||||||||||| || || || ||||| ||| | || || || ||||||||| ||||||| ||||||||||| || || || |||||||||| |      | |||| |||    |   | |   ||| | | | |    || ||  ||| ||                                                     
ATCGTGACACTGTGGTATCGTGCCCCGGAAGTACTTTTGGGTGCTACTCACTACTCCATTCCTGTAGATATTTGGTCCGTCGGCTGCATTTTCGgtatgtt--tcctcgtacctt----tcgcaaacataatgtggctcgct--tgctttctttgtgcag--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354423|gb|DC953829.1|DC953829
EST:     AACCCACTACTCCCTTCCTGGTGATATTTGGTCTGTNGGATGTATTTTCG                         CTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC
genomic: AACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaac ... gtttgtccagCTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC
EST: gi|208368696|gb|DC955181.1|DC955181
EST:     AACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCG                         CTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC
genomic: AACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaac ... gtttgtccagCTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC
EST: gi|208357331|gb|DC949933.1|DC949933
EST:     AACCCACTACT-CCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCG                         CTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC
genomic: AACCCACTACTCCCTTCCTGTTGATATTTGGTCTGTTGGATGTATTTTCGgtaagcaaac ... gtttgtccagCTGAGCTCGTTCGCAAAATGCCGCTCTTCACCGGGGATTCAGAACTTCAAC